Structure of PDB 4m1d Chain I

Receptor sequence

>4m1dI (length=231) Species: 9606 (Homo sapiens) [Search protein sequence]

EVQLVESGGGLVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGR
IKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYSCTT
DGFIMIRGVSEDYYYYYMDVWGKGTTVTVSSASTKGPSVFPLAPCSRSTS
GGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVV
TVPSSSLGTQTYTCNVNHKPSNTKVDKRVEL

3D structure

PDB

4m1d Thermodynamic Signatures of the Antigen Binding Site of mAb 447-52D Targeting the Third Variable Region of HIV-1 gp120.

Chain

Resolution

1.8 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	I	W33 R50 D95 E100E D100F Y100G Y100H Y100I Y100J	W33 R50 D101 E111 D112 Y113 Y114 Y115 Y116

External links

PDB	RCSB:4m1d, PDBe:4m1d, PDBj:4m1d
PDBsum	4m1d
PubMed	23944979

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