Structure of PDB 3shd Chain I

Receptor sequence
>3shdI (length=150) Species: 405955 (Escherichia coli APEC O1) [Search protein sequence]
MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAAR
ELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSD
IDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTK
3D structure
PDB3shd Structure and atypical hydrolysis mechanism of the Nudix hydrolase Orf153 (YmfB) from Escherichia coli
ChainI
Resolution2.5 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) E23 E51 E55 R119
Catalytic site (residue number reindexed from 1) E23 E51 E55 R119
Enzyme Commision number 3.6.1.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MN I E51 E55 E51 E55
Gene Ontology
Molecular Function
GO:0004787 thiamine diphosphate phosphatase activity
GO:0016787 hydrolase activity
GO:0017110 nucleoside diphosphate phosphatase activity
GO:0017111 ribonucleoside triphosphate phosphatase activity

View graph for
Molecular Function
External links
PDB RCSB:3shd, PDBe:3shd, PDBj:3shd
PDBsum3shd
PubMed
UniProtA1AA28|NUDJ_ECOK1 Phosphatase NudJ (Gene Name=nudJ)

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