Structure of PDB 1nak Chain I

Receptor sequence

>1nakI (length=214) Species: 10090 (Mus musculus) [Search protein sequence]

EVQLQESGPSLVKPSQTLSLTCSVTGVSITSGYWNWIRKFPGNKFEYMGY
ISKSGSAYYNPSLKSRISFTRDTSKNQFYLKLNSVTTEDTATYYCAIDDF
DIWGAGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPV
TVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNVAHP
ASSTKVDKKIVPRD

3D structure

PDB

1nak Recurring conformation of the human immunodeficiency virus type 1 gp120 V3 loop.

Chain

Resolution

2.57 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	I	Y33 N35 Y50 D95 D96	Y33 N35 Y50 D98 D99

External links

PDB	RCSB:1nak, PDBe:1nak, PDBj:1nak
PDBsum	1nak
PubMed	14592768

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