Structure of PDB 4v8p Chain HO

Receptor sequence

>4v8pHO (length=134) Species: 5911 (Tetrahymena thermophila) [Search protein sequence]

MSQLVWEIVKNNNAFLVKNNGVAFTTDPFSVTGRNTQVGLGFTHRHGVAL
KGGAKQAIATSLRKNQSHKVKKTGTIEAETLTVKGGVQRVAKVIRGRFQS
KGLKQFALKKLVNFHRANVRAQANLKAESKAKKN

3D structure

PDB

4v8p Crystal Structure of the Eukaryotic 60S Ribosomal Subunit in Complex with Initiation Factor 6.

Chain

Resolution

3.52 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	HO	W6 N12 A14 K18 T32 T36 Q37 V38 R45 K55 Q56 L62 K64 H68 K69 V70 T73 E79 L81 V83 K84 Q88 R89 K92 S100 K101 G102 L103 F106 H115 R116	W6 N12 A14 K18 T32 T36 Q37 V38 R45 K55 Q56 L62 K64 H68 K69 V70 T73 E79 L81 V83 K84 Q88 R89 K92 S100 K101 G102 L103 F106 H115 R116

Gene Ontology

	Cellular Component
GO:0005840	ribosome
GO:1990904	ribonucleoprotein complex

External links

PDB	RCSB:4v8p, PDBe:4v8p, PDBj:4v8p
PDBsum	4v8p
PubMed	22052974
UniProt	P0DJ20\|RL28_TETTH Large ribosomal subunit protein eL28 (Gene Name=RPL28)