Structure of PDB 8p0k Chain H

Receptor sequence
>8p0kH (length=382) Species: 10245 (Vaccinia virus) [Search protein sequence]
MDNLFTFLHEIEDRYARTIFNFHLISCDEIGDIYGLMKERISSEDMFDNI
VYNKDIHPAIKKLVYCDIQLTKHIINQNTYPVFNDSSQVKCCHYFDINSD
NSNISSRTVEIFEREKSSLVSYIKTTNKKRKVNYGEIKKTVHGGTNANYF
SGKKSDEYLSTTVRSNINQPWIKTISKRMRVDIINHSIVTRGKSSILQTI
EIIFTNRTCVKIFKDSTMHIILSKDKDEKGCIHMIDKLFYVYYNLFLLFE
DIIQNEYFKEVANVVNHVLTATALDEKLFLIKKMAEHDVYGVSNFKIGMF
NLTFIKSLDHTVFPSLLDEDSKIKFFKGKKLNIVALRSLEDCINYVTKSE
NMIEMMKERSTILNSIDIETESVDRLKELLLK
3D structure
PDB8p0k Cryo EM map and model of the vaccinia RNA polymerase intermediate pre-initiation open promoter complex (CASP target)
ChainH
Resolution2.64 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna H K116 K128 N133 Y134 G135 K138 I196 Q198 F213 M299 K324 F326 K116 K128 N133 Y134 G135 K138 I196 Q198 F213 M299 K324 F326
BS02 dna H T18 S118 S121 Y122 T125 K193 S195 I196 L197 R207 K211 I221 K327 T18 S118 S121 Y122 T125 K193 S195 I196 L197 R207 K211 I221 K327
External links
PDB RCSB:8p0k, PDBe:8p0k, PDBj:8p0k
PDBsum8p0k
PubMed
UniProtP20998|VITF3_VACCC Intermediate transcription factor 3 large subunit (Gene Name=OPG150)

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