Structure of PDB 8k27 Chain H

Receptor sequence

>8k27H (length=302) Species: 979527 (Vibrio phage ICP1_2004_A) [Search protein sequence]

TKLKAPAVLAYSRKINPTNALMFAVNWSDRDNTTAVMVGTKTVAGTQSVR
GNPNDADKGNIQTVNFANLPHNKNTLLVKYNVKFVGDVFKAELGGGEYSN
TLQTALENTDFGTLAYRYVYNIAAGRTLWRNRVGAESIETVITVNDQTFT
FSDLLVNEFDEDVDVAEIADMVAGVLSGEGFVTLKVEHYMLLGEGSEVFP
SQEFVENSKLSKQLFDLNGQAAMHDQKIGNAIRTIDTWYEDATTPIAVEP
YGSVVRNGVAYRAGNKTDLFTLMDGAVNGKSLTEEDQMFVTANLIRGGVF
GG

3D structure

PDB

8k27 Structure of csy complex with short DNA

Chain

Resolution

3.6 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	H	A11 Y12 R14 L94 W130 F205 V206 Q227 K228 N231 R234 R257 R297 G299 V300	A10 Y11 R13 L93 W129 F204 V205 Q226 K227 N230 R233 R256 R296 G298 V299
BS02	dna	H	V9 V300	V8 V299

External links

PDB	RCSB:8k27, PDBe:8k27, PDBj:8k27
PDBsum	8k27
PubMed
UniProt	F1D5V6

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