Structure of PDB 8dp3 Chain H

Receptor sequence

>8dp3H (length=226) Species: 32630 (synthetic construct) [Search protein sequence]

SEVQLVESGGGLVQPGGSLRLSCAASGFYISYSSIHWVRQAPGKGLEWVA
SISPYSGSTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARQ
GYRRRSGRGFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGC
LVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLG
TQTYICNVNHKPSNTKVDKKVEPKSC

3D structure

PDB

8dp3 Crystal structure of a highly conserved enteroviral 5' cloverleaf RNA replication element.

Chain

Resolution

1.91 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	H	Y34 P56 Y57 S58 S60 Q102 Y104 R105 R106 R110	Y32 P54 Y55 S56 S58 Q100 Y102 R103 R104 R108

External links

PDB	RCSB:8dp3, PDBe:8dp3, PDBj:8dp3
PDBsum	8dp3
PubMed	37029118

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