Structure of PDB 6vjn Chain H

Receptor sequence

>6vjnH (length=214) Species: 9606 (Homo sapiens) [Search protein sequence]

HLQLQESGPGLVKPSETLSLTCAVSGGSSSDYWWSWIRQPPGKGLEWIGR
IDSIGNTYYNPSLRSRVTLSVDTSKNQFSLELTSVTAADTAVYYCARPYC
AIGRCYESWGQGVLVTVSSASTKGPSVFPLAPSSGTAALGCLVKDYFPEP
VTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVN
HKPSNTKVDKRVEP

3D structure

PDB

6vjn Structurally related but genetically unrelated antibody lineages converge on an immunodominant HIV-1 Env neutralizing determinant following trimer immunization.

Chain

Resolution

2.0 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	H	D31 Y32 W33 R50 D52 S53 I54	D31 Y32 W33 R50 D52 S53 I54
BS02	peptide	H	I99 G100	I102 G103

External links

PDB	RCSB:6vjn, PDBe:6vjn, PDBj:6vjn
PDBsum	6vjn
PubMed	34559844

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