Structure of PDB 6vbq Chain H

Receptor sequence

>6vbqH (length=223) Species: 9606 (Homo sapiens) [Search protein sequence]

QVQLVQSGAEVKKPGASVKLSCKASGYTFTDYYIHWVRQAPGQGLEWMGI
INPRRDTTTYAQKFQGRVTMTRDTSTNTVYMELSSLRSDDTAVYFCAKNV
GFCNSDSCYVGMDVWGPGTTVTISSASTKGPSVFPLAPSSSGGTAALGCL
VKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT
QTYICNVNHKPSNTKVDKRVEPK

3D structure

PDB

6vbq HIV vaccine delayed boosting increases Env variable region 2-specific antibody effector functions.

Chain

Resolution

2.116 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	H	Y33 N52 R53 R54 T56 N100 S100A D100B S100C C100D V100F	Y33 N52 R54 R55 T57 N104 S105 D106 S107 C108 V110

External links

PDB	RCSB:6vbq, PDBe:6vbq, PDBj:6vbq
PDBsum	6vbq
PubMed	31996483

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