Structure of PDB 6kbz Chain H

Receptor sequence
>6kbzH (length=220) Species: 562 (Escherichia coli) [Search protein sequence]
CGRFAQSQTREDYLALLARDIPYDPEPIGRYNVAPGTKVLLLSERDEHLH
LDPVFWGYAPGWWDKPPLINARVETAATSRMFKPLWQHGRAICFADGWFE
WKKEGDKKQPFFIYRADGQPIFMAAIGSTPFERGDEAEGFLIVTAAADQG
LVDIHDRRPLVLSPEAAREWMRQEISGKEASEIAASGCVPANQFSWHPVS
RAVGNVKNQGAELIQPVLEV
3D structure
PDB6kbz Molecular basis of abasic site sensing in single-stranded DNA by the SRAP domain of E. coli yedK.
ChainH
Resolution1.653 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.4.-.-
4.-.-.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna H P40 T42 V211 P35 T37 V206
BS02 dna H C2 G3 R4 P40 W67 K70 L73 N75 R77 S84 R85 M86 F87 W106 K113 T149 R162 G209 N210 C1 G2 R3 P35 W62 K65 L68 N70 R72 S79 R80 M81 F82 W101 K108 T144 R157 G204 N205
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003697 single-stranded DNA binding
GO:0008233 peptidase activity
GO:0016829 lyase activity
GO:0160129 protein-DNA covalent cross-linking activity
Biological Process
GO:0006508 proteolysis
GO:0006974 DNA damage response
GO:0009432 SOS response
GO:0106300 protein-DNA covalent cross-linking repair

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Molecular Function
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Biological Process
External links
PDB RCSB:6kbz, PDBe:6kbz, PDBj:6kbz
PDBsum6kbz
PubMed31504793
UniProtP76318|YEDK_ECOLI Abasic site processing protein YedK (Gene Name=yedK)

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