Structure of PDB 6avf Chain H

Receptor sequence
>6avfH (length=269) Species: 9606 (Homo sapiens) [Search protein sequence]
GSHSMRYFYTSVSRPGRGEPRFISVGYVDDTQFVRFDSDAASPREEPRAP
WIEQEGPEYWDRNTQIYKAQAQTDRESLRNLRGYYNQSEAGSHTLQSMYG
CDVGPDGRLLRGHDQYAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAA
REAEQRRAYLEGECVEWLRRYLENGKDKLERADPPKTHVTHHPISDHEAT
LRCWALGFYPAEITLTWQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQR
YTCHVQHEGLPKPLTLRWE
3D structure
PDB6avf Divergent T-cell receptor recognition modes of a HLA-I restricted extended tumour-associated peptide.
ChainH
Resolution2.028 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide H Y7 R62 N63 Q70 T73 S77 N80 Y84 Y99 D114 Y116 Y123 T143 W147 E152 Q155 R156 Y159 W167 Y171 Y7 R62 N63 Q70 T73 S77 N80 Y84 Y99 D114 Y116 Y123 T143 W147 E152 Q155 R156 Y159 W167 Y171
Gene Ontology
Biological Process
GO:0006955 immune response
GO:0019882 antigen processing and presentation

View graph for
Biological Process
External links
PDB RCSB:6avf, PDBe:6avf, PDBj:6avf
PDBsum6avf
PubMed29531227
UniProtP01889|HLAB_HUMAN HLA class I histocompatibility antigen, B alpha chain (Gene Name=HLA-B)

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