Structure of PDB 5v6m Chain H

Receptor sequence

>5v6mH (length=213) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

QEQLEESGGGLVQPEGSLTLTCKASGFSFSAIAMCWVRQAPGKGLEWIGC
IATDTGSTYYANWAKGRFTISNPSSTTVTLQMTSLTAADTATYFCARNFY
LWGPGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVT
VSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHK
PSNTKVDKKVEPK

3D structure

PDB

5v6m Increased epitope complexity correlated with antibody affinity maturation and a novel binding mode revealed by structures of rabbit antibodies against the third variable loop (V3) of HIV-1 gp120.

Chain

Resolution

1.9 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	H	C50 A52 D53 N95 Y97	C50 A52 D54 N98 Y100
BS02	CA	H	E46 W47	E46 W47

External links

PDB	RCSB:5v6m, PDBe:5v6m, PDBj:5v6m
PDBsum	5v6m
PubMed	29343576

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