Structure of PDB 5v6l Chain H

Receptor sequence

>5v6lH (length=220) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

QEQLVESGGGLVKPGGTLTLTCTASGFSFSSGFFMCWVRQAPGKGLEWIG
CIYGGSNDNTYYANWAKGRFTISKTSSTTVTLQMTSRTAADTATYFCARD
AGTSGYIAYNLWGPGTLVTVSSGQPKAPSVFPLAPCCGDTPSSTVTLGCL
VKGYLPEPVTVTWNSGTLTNGVRTFPSVRQSSGLYSLSSVVSVTSSSQPV
TCNVAHPATNTKVDKTVAPS

3D structure

PDB

5v6l Increased epitope complexity correlated with antibody affinity maturation and a novel binding mode revealed by structures of rabbit antibodies against the third variable loop (V3) of HIV-1 gp120.

Chain

Resolution

2.549 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	H	G32 F34 Y52 N56 Y58 D95 G97 S99 G100 Y100A I100B	G32 F34 Y53 N59 Y61 D100 G102 S104 G105 Y106 I107

External links

PDB	RCSB:5v6l, PDBe:5v6l, PDBj:5v6l
PDBsum	5v6l
PubMed	29343576

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