Structure of PDB 5tkk Chain H

Receptor sequence

>5tkkH (length=213) Species: 10090 (Mus musculus) [Search protein sequence]

VQLQESGPGLVKPSQSLSLTCSVTGYSITRAYYWNWIRQFPGNKLEWMGY
ILYDGRSDYNPSLKNRVSITRDTSKNQFFLKLNSVTAEDTARYYCTREGN
YRAYWGQGTLVTVSAAKTTAPSVYPLAPVCGSSVTLGCLVKGYFPEPVTL
TWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPAS
STKVDKKIEPRVP

3D structure

PDB

5tkk Epitope-based vaccine design yields fusion peptide-directed antibodies that neutralize diverse strains of HIV-1.

Chain

Resolution

1.55 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	H	Y33 Y34 Y53 E95 G96 N97 Y98 R99	Y32 Y33 Y53 E98 G99 N100 Y101 R102

External links

PDB	RCSB:5tkk, PDBe:5tkk, PDBj:5tkk
PDBsum	5tkk
PubMed	29867235

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