Structure of PDB 5m63 Chain H

Receptor sequence

>5m63H (length=222) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

QSLEESGGDLVKPGASLTLTCKASGLDLPSYFMCWVRQAPGKGLEWIACI
RSSSNEILYYASWAKGRFTISKTSSTTVTLQMTSLTAADTATYFCARDYF
GEGDVFYHGGVFGLWGSGTLVTVSSGQPKAPSVFPLAPCCGDTPSSTVTL
GCLVKGYLPEPVTVTWNSGTLTNGVRTFPSVRQSSGLYSLSSVVSVTSSS
QPVTCNVAHPATNTKVDKTVAP

3D structure

PDB

5m63 Structure of a protective epitope of group B Streptococcus type III capsular polysaccharide.

Chain

Resolution

2.74 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	SIA	H	Y126 H127	Y107 H108	PDBbind-CN: -logKd/Ki=6.96,Kd=0.11uM

External links

PDB	RCSB:5m63, PDBe:5m63, PDBj:5m63
PDBsum	5m63
PubMed	28439022

[Back to BioLiP]