Structure of PDB 5c8d Chain H

Receptor sequence
>5c8dH (length=277) Species: 262724 (Thermus thermophilus HB27) [Search protein sequence]
LVPRGSHMTSVYTIAEVEAMTGLSAEVLRQWERRYGFPKPRRRLYSAEDV
EALKTIKRWLEEGATPKAAIRRYLAQEVRPEDLGTGLLEALLRGDLAGAE
ALFRRGLRFWGPEGVLEHLLLPVLREVGEAWHRGEIGVAEEHLASTFLRA
RLQELLDLAGFPPGPPVLVTTPPGERHEIGAMLAAYHLRRKGVPALYLGP
DTPLPDLRALARRLGAGAVVLSAVLSEPLRALPDGALKDLAPRVFLGGQG
AGPEEARRLGAEYMEDLKGLAEALWLP
3D structure
PDB5c8d Structural basis for gene regulation by a B12-dependent photoreceptor.
ChainH
Resolution2.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 B12 H L124 R125 G128 E141 H142 R176 H177 E178 I179 L183 S222 L225 G247 G248 M264 D266 L267 L124 R125 G128 E141 H142 R176 H177 E178 I179 L183 S222 L225 G247 G248 M264 D266 L267
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003700 DNA-binding transcription factor activity
GO:0031419 cobalamin binding
GO:0042802 identical protein binding
GO:0046872 metal ion binding
Biological Process
GO:0006355 regulation of DNA-templated transcription

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Molecular Function
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Biological Process
External links
PDB RCSB:5c8d, PDBe:5c8d, PDBj:5c8d
PDBsum5c8d
PubMed26416754
UniProtQ746J7

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