Structure of PDB 4dqo Chain H

Receptor sequence

>4dqoH (length=240) Species: 9606 (Homo sapiens) [Search protein sequence]

QEQLVESGGGVVQPGGSLRLSCLASGFTFHKYGMHWVRQAPGKGLEWVAL
ISDDGMRKYHSDSMWGRVTISRDNSKNTLYLQFSSLKVEDTAMFFCAREA
GGPIWHDDVKYYDFNDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAP
SSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLY
SLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC

3D structure

PDB

4dqo Structural basis for diverse N-glycan recognition by HIV-1-neutralizing V1-V2-directed antibody PG16.

Chain

Resolution

2.438 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	MAN	H	N100P H100R	N120 H122
BS02	SIA	H	K57 H59	K58 H60

External links

PDB	RCSB:4dqo, PDBe:4dqo, PDBj:4dqo
PDBsum	4dqo
PubMed	23708607

[Back to BioLiP]