Structure of PDB 4d1q Chain H

Receptor sequence

>4d1qH (length=509) Species: 7370 (Musca domestica) [Search protein sequence]

LKTVSADCKKEAIEKCAQWVVRDCRPFSAVSGSGFIDMIKFFIKVGAEYG
EHVNVEELLPSPITLSRKVTSDAKEKKALIGREIKSAVEKDGASATIDLW
TDNYIKRNFLGVTLHYHENNELRDLILGLKSLDFERSTAENIYKKLKAIF
SQFNVEDLSSIKFVTDRGANVVKSLANNIRINCSSHLLSNVLENSFEETP
ELNMPILACKNIVKYFKKANLQHRLRSSLKSECPTRWNSTYTMLRSILDN
WESVIQILSEAGETQRIVHINKSIIQTMVNILDGFERIFKELQTCSSPSL
CFVVPSILKVKEICSPDVGDVADIAKLKVNIIKNVRIIWEENLSIWHYTA
FFFYPPALHMQQEKVAQIKEFCLSKMEDLELINRMSSSIDLTSHSKDIST
TSFFFPQLTQNNSREPPVCPSDEFEFYRKEIVILSEDFKVMEWWNLNSKK
YPKLSKLALSLLSIPASSAASERTFSLAGNIITEKRNRIGQQTVDSLLFL
NSFYKNFCK

3D structure

PDB

4d1q Structural Basis of Hat Transposon End Recognition by Hermes, an Octameric DNA Transposase from Musca Domestica.

Chain

Resolution

3.4 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	dna	H	R107 S148 K585 R586 R588 I589 T593	R25 S66 K485 R486 R488 I489 T493
BS02	dna	H	S143 T146 R149 E584 N587 R588	S61 T64 R67 E484 N487 R488
BS03	dna	H	P108 F109 S110 K372 Q375 T376 C377 S378 R573 L577 K605	P26 F27 S28 K290 Q293 T294 C295 S296 R473 L477 K505
BS04	dna	H	S309 S310 K312 T317 R318 W319 Q375 E572 S576	S227 S228 K230 T235 R236 W237 Q293 E472 S476

Gene Ontology

	Molecular Function
GO:0046983	protein dimerization activity

View graph for
Molecular Function

External links

PDB	RCSB:4d1q, PDBe:4d1q, PDBj:4d1q
PDBsum	4d1q
PubMed	25036632
UniProt	Q25442

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