Structure of PDB 3j7r Chain H

Receptor sequence

>3j7rH (length=190) Species: 9823 (Sus scrofa)

MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGK
KKKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFP
INVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGND
IELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQA

3D structure

• PDB: 3j7r Structure of the Mammalian ribosome-sec61 complex to 3.4 a resolution.
• Chain: H
• Resolution: 3.9 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	H	M1 R23 H40 N42 V43 E44 K50 K59 R64 K65 A68 R71 T72 S75 H76 N79 H98 F99 E120 K121 Y122 R129 I151 E152 S155 Q163 K170 D171 R173 K174 F175	M1 R23 H40 N42 V43 E44 K50 K59 R64 K65 A68 R71 T72 S75 H76 N79 H98 F99 E120 K121 Y122 R129 I151 E152 S155 Q163 K170 D171 R173 K174 F175

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome
• GO:0019843 rRNA binding

Biological Process

• GO:0006412 translation

Cellular Component

• GO:0005840 ribosome
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:3j7r, PDBe:3j7r, PDBj:3j7r
• PDBsum: 3j7r
• PubMed: 24930395
• UniProt: I3LP78