Structure of PDB 1mfd Chain H

Receptor sequence

>1mfdH (length=211) Species: 10090 (Mus musculus) [Search protein sequence]

EVQVQQSGTVLARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGA
IYPGNSATFYNHKFRAKTKLTAVTSTITAYMELSSLTNEDSAVYYCTRGG
HGYYGDYWGQGASLTVSSAKTTPPSVYPLAPGMVTLGCLVKGYFPEPVTV
TWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPAS
STKVDKKIVPR

3D structure

PDB

1mfd Solution structure of a trisaccharide-antibody complex: comparison of NMR measurements with a crystal structure.

Chain

Resolution

2.1 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	MMA	H	W283 H351	W33 H101	PDBbind-CN: -logKd/Ki=5.31,Kd=4.9uM
BS02	ABE	H	W283 H285 G350 G352	W33 H35 G100 G102	PDBbind-CN: -logKd/Ki=5.31,Kd=4.9uM

External links

PDB	RCSB:1mfd, PDBe:1mfd, PDBj:1mfd
PDBsum	1mfd
PubMed	8172893

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