Structure of PDB 7qiz Chain G

Receptor sequence

>7qizG (length=278) Species: 4081 (Solanum lycopersicum)

AFIKVQKTRAYFKRFQVKFKRRREGKTDYRARNRLINQDKNKYNTPKYRF
VVRFTNKDIIAQIVSASIAGDMILASAYANELPHYGLEVGLTNYAAAYCT
GLLLARRVLKKLEMDEEYEGNLEVNGEDYSVEPAESRRPFRALLDVGLLR
TTTGNRVFGALKGALDGGLDIPHSEKRFAGFSKDSKQLDADVHRKYIYGG
HVATYMQTLIEDEPEKYQTHFSQYIKKGFEADGLEEMYKKVHAAIRADPH
KRYNLKKLTYEERKAKLIERLNALNSAA

3D structure

• PDB: 7qiz Specific features and methylation sites of a plant ribosome
• Chain: G
• Resolution: 2.38 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	G	A2 F3 I4 K5 V6 Q7 K8 R10 A11 Y12 R15 F16 Q17 K19 R23 T28 D29 R31 R35 L36 K43 Y44 T46 K48 R138 R139 P140 L144 V147 L149 R151 T152 P173 H174 S175 R178	A1 F2 I3 K4 V5 Q6 K7 R9 A10 Y11 R14 F15 Q16 K18 R22 T27 D28 R30 R34 L35 K42 Y43 T45 K47 R137 R138 P139 L143 V146 L148 R150 T151 P172 H173 S174 R177
BS02	rna	G	R10 F13 K14 V18 F20 K21 R22 R24 T28 Y30 R33 R50 R54 T56 N57 K58 I61 Q63 I69 A70 G71 D72 I74 S77 Y79 N94 Y95 R151 T154 N156 R157 Y197 H202 Y206 K217 H221 F222 S223 Q224 Y225 H263 R265 Y266 N267 L268 K270 L271 Y273 R276 L280 R283	R9 F12 K13 V17 F19 K20 R21 R23 T27 Y29 R32 R49 R53 T55 N56 K57 I60 Q62 I68 A69 G70 D71 I73 S76 Y78 N93 Y94 R150 T153 N155 R156 Y196 H201 Y205 K216 H220 F221 S222 Q223 Y224 H250 R252 Y253 N254 L255 K257 L258 Y260 R263 L267 R270

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome
• GO:0008097 5S rRNA binding

Biological Process

• GO:0000027 ribosomal large subunit assembly
• GO:0006412 translation

Cellular Component

• GO:0005737 cytoplasm
• GO:0005840 ribosome
• GO:0022625 cytosolic large ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:7qiz, PDBe:7qiz, PDBj:7qiz
• PDBsum: 7qiz
• PubMed: 35643637
• UniProt: A0A3Q7H274