Structure of PDB 7d73 Chain G

Receptor sequence
>7d73G (length=360) Species: 9606 (Homo sapiens) [Search protein sequence]
MKALILVGGYGTRLRPLTLSTPKPLVDFCNKPILLHQVEALAAAGVDHVI
LAVSYMSQVLEKEMKAQEQRLGIRISMSHEEEPLGTAGPLALARDLLSET
ADPFFVLNSDVICDFPFQAMVQFHRHHGQEGSILVTKVEEPSKYGVVVCE
ADTGRIHRFVEKPQVFVSNKINAGMYILSPAVLQRIQLQPTSIEKEVFPI
MAKEGQLYAMELQGFWMDIGQPKDFLTGMCLFLQSLRQKQPERLCSGPGI
VGNVLVDPSARIGQNCSIGPNVSLGPGVVVEDGVCIRRCTVLRDARIRSH
SWLESCIVGWRCRVGQWVRMENVTVLGEDVIVNDELYLNGASVLPHKSIG
ESVPEPRIIM
3D structure
PDB7d73 Cryo-EM structures of human GMPPA-GMPPB complex reveal how cells maintain GDP-mannose homeostasis.
ChainG
Resolution3.0 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 2.7.7.13: mannose-1-phosphate guanylyltransferase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 GTP G L6 V7 G8 G11 T12 R13 K23 A52 P83 G85 T86 N108 S109 L6 V7 G8 G11 T12 R13 K23 A52 P83 G85 T86 N108 S109
Gene Ontology
Molecular Function
GO:0004475 mannose-1-phosphate guanylyltransferase (GTP) activity
GO:0005515 protein binding
GO:0005525 GTP binding
GO:0016740 transferase activity
GO:0016779 nucleotidyltransferase activity
GO:0046872 metal ion binding
Biological Process
GO:0006486 protein glycosylation
GO:0009058 biosynthetic process
GO:0009298 GDP-mannose biosynthetic process
GO:0019673 GDP-mannose metabolic process
GO:0061728 GDP-mannose biosynthetic process from mannose
GO:0141199 GDP-mannose biosynthetic process from glucose
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0120508 GDP-mannose pyrophosphorylase complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7d73, PDBe:7d73, PDBj:7d73
PDBsum7d73
PubMed33986552
UniProtQ9Y5P6|GMPPB_HUMAN Mannose-1-phosphate guanyltransferase beta (Gene Name=GMPPB)

[Back to BioLiP]