Structure of PDB 6y7c Chain G

Receptor sequence

>6y7cG (length=226) Species: 559292 (Saccharomyces cerevisiae S288C)

MKLNISYPVNGSQKTFEIDDEHRIRVFFDKRIGQEVDGEAVGDEFKGYVF
KISGGNDKQGFPMKQGVLLPTRIKLLLTKNVSCYRPRRDGERKRKSVRGA
IVGPDLAVLALVIVKKGEQELEGLTDTTVPKRLGPKRANNIRKFFGLSKE
DDVRDFVIRREVTKGEKTYTKAPKIQRLVTPQRLQRKRHQRALKVRNAQA
QREAAAEYAQLLAKRLSERKAEKAEI

3D structure

• PDB: 6y7c Good Vibrations: Structural Remodeling of Maturing Yeast Pre-40S Ribosomal Particles Followed by Cryo-Electron Microscopy.
• Chain: G
• Resolution: 3.8 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	G	N4 S6 Q13 K14 T15 S53 Q59 G60 Q65 G66 C83 R87 R88 D89 G90 E91 R92 R94 K95 V108 V112 K131 R132 L133 G134 K136 R137 N139 N140 K143 R154 V157 R160 K167 Y169 T170 K171 A172 P173 K174 I175 Q176 R177 V179 Q182 R183 L184 Q185 R186 K187 R188 H189 R191 K194 V195 A198 R202	N4 S6 Q13 K14 T15 S53 Q59 G60 Q65 G66 C83 R87 R88 D89 G90 E91 R92 R94 K95 V108 V112 K131 R132 L133 G134 K136 R137 N139 N140 K143 R154 V157 R160 K167 Y169 T170 K171 A172 P173 K174 I175 Q176 R177 V179 Q182 R183 L184 Q185 R186 K187 R188 H189 R191 K194 V195 A198 R202

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome

Biological Process

• GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
• GO:0006364 rRNA processing
• GO:0006412 translation
• GO:0042254 ribosome biogenesis

Cellular Component

• GO:0005634 nucleus
• GO:0005654 nucleoplasm
• GO:0005730 nucleolus
• GO:0005737 cytoplasm
• GO:0005829 cytosol
• GO:0005840 ribosome
• GO:0022627 cytosolic small ribosomal subunit
• GO:0030686 90S preribosome
• GO:0032040 small-subunit processome
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:6y7c, PDBe:6y7c, PDBj:6y7c
• PDBsum: 6y7c
• PubMed: 32138239
• UniProt: P0CX37|RS6A_YEAST Small ribosomal subunit protein eS6A (Gene Name=RPS6A)