Structure of PDB 6ifr Chain G

Receptor sequence

>6ifrG (length=217) Species: 767463 (Streptococcus thermophilus ND03) [Search protein sequence]

TFAKIKFSAQIRLETGLHIGGSDAFAAIGAINSPVIKDPITNLPIIPGSS
LKGKMRTLLAKVYNEKVAEKPSDDSDILSRLFGNSKDKRFKMGRLIFRDA
FLSNADELDSLGVRSYTEVKFENTIDRITAEANPRQIERAIRNSTFDFEL
IYEITDENENQVEEDFKVIRDGLKLLELDYLGGSGSRGYGKVAFENLKAT
TVFGNYDVKTLNELLTA

3D structure

PDB

6ifr Structure Studies of the CRISPR-Csm Complex Reveal Mechanism of Co-transcriptional Interference

Chain

Resolution

3.4 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	G	I20 G21 S50 S51 K53 G54 K55 R57 T58 G84 S86 F122 E123 N124 T125 I126 R128 R136 Y181 G184 G186 R188	I19 G20 S49 S50 K52 G53 K54 R56 T57 G83 S85 F121 E122 N123 T124 I125 R127 R135 Y180 G183 G185 R187
BS02	rna	G	G30 N33 K87 A133 N134 P135 R136	G29 N32 K86 A132 N133 P134 R135

External links

PDB	RCSB:6ifr, PDBe:6ifr, PDBj:6ifr
PDBsum	6ifr
PubMed	30503210

[Back to BioLiP]