Structure of PDB 5j8k Chain G

Receptor sequence

>5j8kG (length=652) Species: 9940 (Ovis aries)

AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAACAACAA
AAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAHAAACAA
CAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAACA
ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AA

3D structure

• PDB: 5j8k The architecture of respiratory supercomplexes.
• Chain: G
• Resolution: 7.8 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	SF4	G	H101 X103 C105 C108 X109 X110 X111 C114 X117	H94 X96 C98 C101 X102 X103 X104 C107 X110
BS02	SF4	G	C153 X154 X155 C156 X157 X158 C159 C203 X204 X205	C146 X147 X148 C149 X150 X151 C152 C196 X197 X198
BS03	FES	G	X39 X40 C41 X42 C52 X53 X54 C55 C69	X32 X33 C34 X35 C45 X46 X47 C48 C62

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Fri Nov 15 20:32:18 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '5j8k', asym_id = 'G', title = 'The architecture of respiratory supercomplexes.'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='5j8k', asym_id='G', title='The architecture of respiratory supercomplexes.')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0016020', uniprot = '', pdbid = '5j8k', asym_id = 'G'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0016020', uniprot='', pdbid='5j8k', asym_id='G')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>