Structure of PDB 5ixm Chain G

Receptor sequence
>5ixmG (length=539) Species: 632 (Yersinia pestis) [Search protein sequence]
SGFLIPNAKFTSNNGFEFLLPYYWNIAPNFDATITPHYMERRGLQWQNEF
RYLLAPGSGTMALDWLPNDRIYTGPDGTDKNATRWLYYWGHSGVMDQVWR
FNINYTRVSDPAYFTDLTSQYGSTTDGYATQIFTAGYANENWNATLSSKQ
FQVFTAAGNSNAYRAQPQLDMNYYKNDVGPFDMHVYGQAAKFTSVNPTNP
EASRFHIEPTVNLPLSNSWGSINTEAKLLATHYQQDIPASFADNASNPKL
KDSVNRVLPQFKVDGKVVFDRSMDWATGFTQTLEPRAQYLYVPYRNQDDI
YIYDTTLMQSDYSGLFRDRTYSGLDRIASANQVSTGLTSRIYDDARVERF
NVSVGQIYYFSRSRTGNTNATGSLVWAGDTFWRINDQLGLKGGAQYDTRL
GSLTLGNAIMEYRKDADRMIQLNYRYASPKYIQAAVPKVYNPDYQQGISQ
VGTTASWPIADRWAIVGAYYYDTKAKQPASQLVGLQYNTCCWAVNLGYER
KITGWNAQGQTSKYDNKIGFNIETAQMLNSGILPYQSAF
3D structure
PDB5ixm Structural and Functional Characterization of the LPS Transporter LptDE from Gram-Negative Pathogens.
ChainG
Resolution2.746 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 C8E G F181 L213 F181 L213
BS02 C8E G R349 F350 R349 F350
BS03 C8E G S216 S221 I222 S216 S221 I222
BS04 C8E G Y289 F360 Y289 F360
Gene Ontology
Biological Process
GO:0061024 membrane organization
Cellular Component
GO:0019867 outer membrane

View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5ixm, PDBe:5ixm, PDBj:5ixm
PDBsum5ixm
PubMed27161977
UniProtQ8ZIK3|LPTD_YERPE LPS-assembly protein LptD (Gene Name=lptD)

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