Structure of PDB 4d1q Chain G

Receptor sequence

>4d1qG (length=499) Species: 7370 (Musca domestica) [Search protein sequence]

LKTVSADCKKEAIEKCAQWVVRDCRPFSAVSGSGFIDMIKFFIKVGAEYG
EHVNVEELLPSPITLSRKVTSDAKEKKALIGREIKSAVEKDGASATIDLW
TDNYIKRNFLGVTLHYHENNELRDLILGLKSLDFERSTAENIYKKLKAIF
SQFNVEDLSSIKFVTDRGANVVKSLANNIRINCSSHLLSNVLENSFEETP
ELNMPILACKNIVKYFKKANLQHRLRSSLKSECPTRWNSTYTMLRSILDN
WESVIQILSEAGETQRIVHINKSIIQTMVNILDGFERIFKELQTCSSPSL
CFVVPSILKVKEICSPDVGDVADIAKLKVNIIKNVRIIWEENLSIWHYTA
FFFYPPALHMQQEKVAQIKEFCLSKMEDLELISHSKDISTTSFFFPQLTQ
NNSREPPVCPSDEFEFYRKEIVILSEDFKVMEWWNLNSKKYPKLSKLALS
LLSIPASSAASERTFSLAGNIITEKRNRIGQQTVDSLLFLNSFYKNFCK

3D structure

PDB

4d1q Structural Basis of Hat Transposon End Recognition by Hermes, an Octameric DNA Transposase from Musca Domestica.

Chain

Resolution

3.4 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	dna	G	P108 F109 S110 Q375 T376 C377 S378 R573 K605	P26 F27 S28 Q293 T294 C295 S296 R463 K495
BS02	dna	G	K91 W182 S309 S310 K312 T317 R318 W319 Q375 E572 S576	K9 W100 S227 S228 K230 T235 R236 W237 Q293 E462 S466
BS03	dna	G	R107 K585 R586 I589 G590 T593	R25 K475 R476 I479 G480 T483
BS04	dna	G	S143 T146 R149 N587 R588	S61 T64 R67 N477 R478

Gene Ontology

	Molecular Function
GO:0046983	protein dimerization activity

View graph for
Molecular Function

External links

PDB	RCSB:4d1q, PDBe:4d1q, PDBj:4d1q
PDBsum	4d1q
PubMed	25036632
UniProt	Q25442

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