Structure of PDB 6t83 Chain Fy

Receptor sequence

>6t83Fy (length=222) Species: 4932 (Saccharomyces cerevisiae)

AEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDAKAA
GSYYVEAQHKLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKA
TLELLKLIEPYVAYGYPSYSTIRQLVYKRGFGKINKQRVPLSDNAIIEAN
LGKYGILSIDDLIHEIITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKH
FIQGGSFGNREEFINKLVKSMN

3D structure

• PDB: 6t83 Molecular mechanism of translational stalling by inhibitory codon combinations and poly(A) tracts.
• Chain: Fy
• Resolution: 4.0 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	Fy	E131 R218 H222 Q225	E109 R196 H200 Q203
BS02	rna	Fy	R30 R33 K34 N37 R41 R60 R67 K70 K90 G91 I92 N93 K94 P97 K98 K101 L105 R110 I111 A122 L126 Y141 R145 K150 R151 K155 K158 Q159 R160 K196 N200 K206 L207 N209 P210 S211 G212 W214 P217 R218 K219 F220 K241	R8 R11 K12 N15 R19 R38 R45 K48 K68 G69 I70 N71 K72 P75 K76 K79 L83 R88 I89 A100 L104 Y119 R123 K128 R129 K133 K136 Q137 R138 K174 N178 K184 L185 N187 P188 S189 G190 W192 P195 R196 K197 F198 K219

Gene Ontology

Molecular Function

• GO:0003723 RNA binding
• GO:0003735 structural constituent of ribosome

Biological Process

• GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
• GO:0000470 maturation of LSU-rRNA
• GO:0002181 cytoplasmic translation
• GO:0042273 ribosomal large subunit biogenesis

Cellular Component

• GO:0005737 cytoplasm
• GO:0005829 cytosol
• GO:0005840 ribosome
• GO:0022625 cytosolic large ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:6t83, PDBe:6t83, PDBj:6t83
• PDBsum: 6t83
• PubMed: 31858614
• UniProt: P05737|RL7A_YEAST Large ribosomal subunit protein uL30A (Gene Name=RPL7A)