Structure of PDB 3jag Chain FF

Receptor sequence

>3jagFF (length=191) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

TPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRK
AQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLV
NAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAF
RNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR

3D structure

PDB

3jag Structural basis for stop codon recognition in eukaryotes.

Chain

Resolution

3.65 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	FF	R127 T133 V134 R135 R136 S202	R114 T120 V121 R122 R123 S189
BS02	rna	FF	H51 A57 K59 R60 K63 R71 N74 M76 M77 H79 G80 R81 N82 N83 G84 K86 M88 I92 N148 R159 F163 R164 N165 I166 T168 I169	H38 A44 K46 R47 K50 R58 N61 M63 M64 H66 G67 R68 N69 N70 G71 K73 M75 I79 N135 R146 F150 R151 N152 I153 T155 I156

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003729	mRNA binding
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding

	Biological Process
GO:0000028	ribosomal small subunit assembly
GO:0006412	translation

	Cellular Component
GO:0005634	nucleus
GO:0005730	nucleolus
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0015935	small ribosomal subunit
GO:0022626	cytosolic ribosome
GO:0022627	cytosolic small ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:3jag, PDBe:3jag, PDBj:3jag
PDBsum	3jag
PubMed	26245381
UniProt	G1TFM5\|RS5_RABIT Small ribosomal subunit protein uS7 (Gene Name=RPS5)

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