Structure of PDB 7tbi Chain F1

Receptor sequence
>7tbiF1 (length=1641) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]
TLTDRTYLPPLEDCLTGRTVILSWRLVASALEDADLARLTSPALSTFLRD
GFVHELLKHPARVFEPKDLKQEFETKTSSGVDTIKKDALWLADAVAINQV
AALRIVLIEYQTRAHSHLVLPLSTQDVANIQEAAGILSLLNPASAVDAET
MWCDFETEARRRERILATYLSERRSFTAAVDALVTFLLHSAPGQHKDLDS
LRRALLKDAFAFDEDLDVPDRSKLLTMAPTYMNLVEDCIARAQALPAKLG
ESFKTEAFELDWLRTAITEAVHSLSIAFQALDLDTPYFAPHELLSEWFEL
MNSSLFLESILGFEVVADLAMPARSLVSAICLKMLNIDRTIQFLHDFDYP
DGEEPYLLSSQTLNKIHTAVTNAVNSGVAASLPVAFAWSLIVHQMHLGYQ
ERASPYDDFLREQRLDNDIAPVEQIAMLATSRGQVYQVMSEMALCLGTTH
EAAFRPAVGARARLVFQDLLKRAAYLIPYQDEPVFSLLAILATGRQYWDV
TDALSASSLNQVYTDMLDDETLFTQFTMQAINRFPYEFNPFSVLCRVLAA
ALITNKDKADVVTGWLWRTPTLTVDWNPAWDRSYELCFEDENTNSFRLTR
DVDLFGERFIIPEGTLGRFVTTARLEFEHSALALLGKRLEVKAAEEICDS
GMAPLDVDEQAEAVAMLATVLRAESLKSTAKGGDPEAPLKFLKEASRLLP
HNKDILTVISDTIDGLVEKELLELDGPQIAVLASCLQFLHAALAVCPGRV
WAYMSRCALIAGDARPGRLSRITGSLDMYAERFDLLSSAVKLFAALIDSA
ACSAVPWLGTSEKILSRVALAIAQAALDVYESTTTWRFRSELDRSILVRD
VVGLMHKLVVHAHTLSSHLTSTLSPAAAHIISSFLTPPPSASSLRFQPLL
GTLLVALITPRATLYPGQSRILAERVTSVLAFCTSLLRAADFLGQTHIPL
QTHLFQSACLLARLPAANAVYRAPVLELLRALVEVAGRAEPPSLLGYLGS
HAARSFISLVEGIDKPFGRVEHAVVTWRFFAAVIRNRQQWMAGCLLTGRV
GEGSVLAAAMERLREVKSLDVQEAVAVMDFVVSAQNYWPWTIFAVRKEKE
VVDALRGYVRGLKAPGMVMKTDGAAAAAFQARIAAYVAETFAMQLYHMRQ
MRQAEKFAGELVADLDYFLREGVMVWGYNASLHGNFARNFAKRFPGVEVD
DFKRTMWLPRELGKGYYYALEVAEQMLGFDAGWGGVKQSGFRKEMETANL
NLSLVEAQVSLFHAWEYLLLELTLSLLPKKENAAFARQVLQVVEQCLEAN
QRSQPPENIFVVLGHARAGLALTLLQRLADANQLPRDVTHLLALVSSAIH
AVENPFGANDLPYFRTLLKILFVVLRAAKQGVAITQQVLTILDRVVARCF
RALAALVHTAPEDLALITAILQACLSVPGIEQCQVQVLNIMAAHDVFQVA
VALFSPVYGELALLFLLELSALPALAEHLACDGLLGHLAAARLAGYMRRT
NVGPFAENAGAARCYAIWAKCLLPLLLNILAALGSTVAPEVAWVLNQFPN
LLQSSVERIEPLLEISEIHSLALLTRVLAACRAQNARDVPEVTWDGAKVL
ECVEYWLKVLRERLVPLGPREVNRLEEKAVGLLVGVREVLE
3D structure
PDB7tbi Architecture of the linker-scaffold in the nuclear pore.
ChainF1
Resolution25.0 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide F1 Y533 I535 Y537 Y475 I477 Y479
BS02 peptide F1 E267 K270 E251 K254
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Nov 15 15:29:33 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '7tbi', asym_id = 'F1', title = 'Architecture of the linker-scaffold in the nuclear pore.'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='7tbi', asym_id='F1', title='Architecture of the linker-scaffold in the nuclear pore.')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0017056', uniprot = '', pdbid = '7tbi', asym_id = 'F1'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0017056', uniprot='', pdbid='7tbi', asym_id='F1')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>