Structure of PDB 8u0u Chain F

Receptor sequence
>8u0uF (length=1126) Species: 666 (Vibrio cholerae) [Search protein sequence]
MNVSIEEFTHFDFQLVPEPSPLDLVITESLKNHIEVNGVKSGALLPLPFQ
TGIGKTYTALNFLLQQMLEQVRSELKEENTGKKSKRLLYYVTDSVDNVVS
AKADLLKLIEKQTVKGEPRFTLEQQEYLKAQIVHLPNQSEQLLQCSDAVL
NDVLIGFNLNAERDVQAEWSAISGLRRHASNPEVKISLNRQAGYFYRNLI
DRLQKKQKGADRVLLSGSLLASVETLLPGEKIRNGSAHVAFLTTSKFLKG
FHNTRSRYSPLRDLSGAVLIIDEIDKQNQVILSELCKQQAQDLIWAIRTL
RANFRDHQLESSPRYDKIEDLFEPLRERLEEFGTNWNLAFAFNTENERPV
RLFSDRSFTHVSSATHKLSLKSDFLRRKNLIFSDLTRFVNEADVIYQWFL
GTMRKAVFQYWENVRGLLEGTFQEAVQSLLTHFNLQEFESAVYESFDTSS
SKSYHHTGLKLVEVAHNQGTRDTVNCKASFLNTSPSGVLADMVDAGAVIL
GISATARADTVIHNFDFKYLNERLGNKLLSLSREQKQRVNNYYHSRRNYK
DNGVVLTVKYLNSRDAFLDALLEEYKPEARSSHFILNHYLGIAESEQAFV
RSWLSKLLASIKAFISSPDNRYMLSLLNRTLDTTRQNINDFIQFCCDKWA
KEFNVKTKTFFGVNADWMRLVGYDEISKHLNTELGKVVVFSTYASMGAGK
NPDYAVNLALEGESLISVADVQLRSDIDSIYLEKPTQLLLSDDYSHTANQ
LCQFHQILSLQENGELSPKSAENWCRQQLMGMSRERSLQQYHQTSDYQSA
VRKYIEQAVGRAGRTSLKRKQILLFVDSGLKEILAEESRDPSLFSHEYVA
LVNKAKSARAVRRLFNLAQRNNKDGMLSIKALVHRLHNQPASKSDIQEWQ
DIRTQLLRYPTVAFQPERFNRLYLQSMTKGYYRYQGNLDGDPNSFEFFDR
VPYGDMVSEEDCSLATLVQNQYVRPWFERKGFACSWQKEANVMTPIMFTN
IYKGALGEQAVEAVLTAFDFTFEEVPNSIYERFDNRVIFAGIEQPIWLDS
KSEGYSSKIALVEEEFGPSKFIYVNALGDTSKPIRYLNSCFVETSPQLAK
VIEIPALIDDTNRTAVQELIKWLHHS
3D structure
PDB8u0u Plasmid targeting and destruction by the DdmDE bacterial defence system.
ChainF
Resolution3.04 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna F V95 N137 Q138 Y194 R197 K246 K249 R257 F639 R669 T670 N704 A705 R709 T780 Q781 D787 E829 R830 Q833 H836 V95 N137 Q138 Y194 R197 K246 K249 R257 F599 R629 T630 N664 A665 R669 T736 Q737 D743 E785 R786 Q789 H792
External links