Structure of PDB 8std Chain F

Receptor sequence
>8stdF (length=198) Species: 220668 (Lactiplantibacillus plantarum WCFS1) [Search protein sequence]
RRNGFPEVIYGAGKTATQIVGIVQALSQQTLPILTTRLSAEKFAALALPT
VYHATAQCMTVGEQPATPGYIAVVTAGTADQPVAEEAAVTAETFGNRVER
VYDVGVAGIHRLFAKLDVIRGARVVIVIAGMEGALASVVGGLVDKPVIAV
PTSVGYGTSFQGMTALLTMLNSCASGITVVNIDNGFGAAYSASMVNQM
3D structure
PDB8std Structure of the LarB-Substrate Complex and Identification of a Reaction Intermediate during Nickel-Pincer Nucleotide Cofactor Biosynthesis.
ChainF
Resolution2.65 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.5.1.143: pyridinium-3,5-biscarboxylic acid mononucleotide synthase.
Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 DND F A124 G125 T126 A127 D128 G153 V154 A177 G178 M179 E180 G181 A182 L183 A76 G77 T78 A79 D80 G105 V106 A129 G130 M131 E132 G133 A134 L135
Gene Ontology
Molecular Function
GO:0016740 transferase activity
GO:0016787 hydrolase activity
Biological Process
GO:0006189 'de novo' IMP biosynthetic process
Cellular Component
GO:0005886 plasma membrane

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:8std, PDBe:8std, PDBj:8std
PDBsum8std
PubMed37831946
UniProtF9UST0|LARB_LACPL Pyridinium-3,5-biscarboxylic acid mononucleotide synthase (Gene Name=larB)

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