Structure of PDB 8sp3 Chain F

Receptor sequence
>8sp3F (length=469) Species: 429344 (Maribacter polysiphoniae) [Search protein sequence]
MKELIYIEEPKILFAHGQKCTDARDGLALFGPLNNLYGIKSGVIGTKQGL
KIFRDYLDHIQKPIYNSNSITRPMFPGFEAVFDCKWESTGITFKEVTNED
IGKFLYNSSTHKRTYDLVSLFIDKIISANKNEDENVDVWFVIVPDEIYKY
CRPNSVLPAETYNYDAQFHDQFKARLLKHTIPTQIFRESTLAWRDFKNAF
GLPIRDFSKIEGHLAWTISTAAFYKAGGKPWKLSDVRNGVCYLGLVYKKV
EKSKNPRNACCAAQMFLDNGDGTVFKGEVGPWYNPKNGQYHLEPKEAKAL
LSQSLQSYKEQIGEYPKEVFIHAKTRFNHQEWDAFLEVTPKETNLVGVTI
SKTKPLKLYKTEGDYTILRGNAYVVNERSAFLWTVGYVPKIQTALSMEVP
NPLFIEINKGEADIKQVLKDILSLTKLNYNACIFADGEPVTLRFADKIGE
ILTASTDIKTPPLAFKYYI
3D structure
PDB8sp3 Oligomerization-mediated activation of a short prokaryotic Argonaute.
ChainF
Resolution3.52 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna F Y148 Q205 H207 R225 T228 F245 H251 L252 T255 N325 E436 N468 A469 I471 D474 G475 Y148 Q167 H169 R187 T190 F207 H213 L214 T217 N287 E398 N430 A431 I433 D436 G437
BS02 dna F R72 N154 K286 K287 T363 R364 M435 R72 N154 K248 K249 T325 R326 M397
BS03 MG F K263 I507 K225 I469
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding

View graph for
Molecular Function
External links
PDB RCSB:8sp3, PDBe:8sp3, PDBj:8sp3
PDBsum8sp3
PubMed37494956
UniProtA0A316E3U6

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