Structure of PDB 8sp0 Chain F

Receptor sequence
>8sp0F (length=469) Species: 429344 (Maribacter polysiphoniae) [Search protein sequence]
MKELIYIEEPKILFAHGQKCTDARDGLALFGPLNNLYGIKSGVIGTKQGL
KIFRDYLDHIQKPIYNSNSITRPMFPGFEAVFDCKWESTGITFKEVTNED
IGKFLYNSSTHKRTYDLVSLFIDKIISANKNEDENVDVWFVIVPDEIYKY
CRPNSVLPAETYNYDAQFHDQFKARLLKHTIPTQIFRESTLAWRDFKNAF
GLPIRDFSKIEGHLAWTISTAAFYKAGGKPWKLSDVRNGVCYLGLVYKKV
EKSKNPRNACCAAQMFLDNGDGTVFKGEVGPWYNPKNGQYHLEPKEAKAL
LSQSLQSYKEQIGEYPKEVFIHAKTRFNHQEWDAFLEVTPKETNLVGVTI
SKTKPLKLYKTEGDYTILRGNAYVVNERSAFLWTVGYVPKIQTALSMEVP
NPLFIEINKGEADIKQVLKDILSLTKLNYNACIFADGEPVTLRFADKIGE
ILTASTDIKTPPLAFKYYI
3D structure
PDB8sp0 Oligomerization-mediated activation of a short prokaryotic Argonaute.
ChainF
Resolution3.33 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna F K286 Y328 T363 R364 K248 Y290 T325 R326
BS02 rna F H207 K211 I223 F224 R225 T228 F245 L252 S434 E436 N439 N468 A469 I471 D474 G475 H169 K173 I185 F186 R187 T190 F207 L214 S396 E398 N401 N430 A431 I433 D436 G437
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding

View graph for
Molecular Function
External links
PDB RCSB:8sp0, PDBe:8sp0, PDBj:8sp0
PDBsum8sp0
PubMed37494956
UniProtA0A316E3U6

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