Structure of PDB 8snf Chain F

Receptor sequence
>8snfF (length=347) Species: 300 (Pseudomonas mendocina) [Search protein sequence]
KWQFTPHQHRGPAEQFGENDHIYSPKLHNGSFKSRGLATFMGAPYCPPDR
HKIREMGAKICFLAVPWDQGQIVRAGASQGAAALRDATTQYFPYMFEYDV
DLLSFFRVVDCGDVPTVPGNNIKSQEYTADYVTECLEGGAKVILFGGDHS
LPIPGAKALSRFTGSGKMGYLHVDCHLDAAPDWAGNLITNCSGAPRALDL
PNCNARNMAHMGSRNGLNPKDWWDFYVDNEIRVVTMSEMIERGLEVCANE
IFERVKKDTDSLYFTWDTDSIDISCMPGNSAPECYGLKGREVIQLARIAG
RHGCDILDIVEFCPYFDPSQIGAKMTVNMIYHYLGSRAQTLRQQGKQ
3D structure
PDB8snf Dinickel enzyme evolved to metabolize the pharmaceutical metformin and its implications for wastewater and human microbiomes.
ChainF
Resolution2.3 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 NI F H159 D184 D188 D277 H149 D174 D178 D267
BS02 NI F D184 H186 D277 D279 D174 H176 D267 D269
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Tue Feb 18 10:29:53 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '8snf', asym_id = 'F', title = 'Dinickel enzyme evolved to metabolize the pharma...mplications for wastewater and human microbiomes.'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='8snf', asym_id='F', title='Dinickel enzyme evolved to metabolize the pharma...mplications for wastewater and human microbiomes.')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0046872', uniprot = '', pdbid = '8snf', asym_id = 'F'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0046872', uniprot='', pdbid='8snf', asym_id='F')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>