Structure of PDB 8q5i Chain F

Receptor sequence

>8q5iF (length=260) Species: 5476 (Candida albicans) [Search protein sequence]

ARGPKKHLKRLAAPSHWMLDKLSGTYAPRPSAGPHKLRESLPLVVFLRNR
LKYALNGREVKAIMMQQHVQVDGKVRTDTTYPAGFMDVITLEATNEHFRL
VYDVKGKFAVHRISAEEAAYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPD
PLIRANDTVKIDLATGKIDDFIKFDTGRLVMVTGGRNLGRVGVIVHREKH
EGGFDLVHIKDALENTFVTRLSNVFVIGTEAGKPWVSLPKGKGIKLSISE
ERDRRRAQQG

3D structure

PDB

8q5i Structural characterization of cephaeline binding to the eukaryotic ribosome using Cryo-Electron Microscopy

Chain

Resolution

2.45 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	F	A2 R3 G4 P5 K6 K7 H8 K10 R11 L12 M19 D21 K22 Y27 A28 P29 R30 A33 G34 K37 L38 R49 N57 G58 R59 M66 Q67 K75 R77 K106 K128 L131 G132 K133 K134 V140 T146 R148 R155 G186 R187 H201 E202 G203 V219 R221 N224 I249 R256	A1 R2 G3 P4 K5 K6 H7 K9 R10 L11 M18 D20 K21 Y26 A27 P28 R29 A32 G33 K36 L37 R48 N56 G57 R58 M65 Q66 K74 R76 K105 K127 L130 G131 K132 K133 V139 T145 R147 R154 G185 R186 H200 E201 G202 V218 R220 N223 I248 R255

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0022627	cytosolic small ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:8q5i, PDBe:8q5i, PDBj:8q5i
PDBsum	8q5i
PubMed
UniProt	A0A1D8PCI6\|RS4_CANAL Small ribosomal subunit protein eS4 (Gene Name=RPS42)

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