Structure of PDB 8pep Chain F

Receptor sequence
>8pepF (length=86) Species: 8355 (Xenopus laevis) [Search protein sequence]
RHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVI
RDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
3D structure
PDB8pep Multivalency of nucleosome recognition by LEDGF.
ChainF
Resolution3.33 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna F R17 R45 I46 K79 T80 R1 R29 I30 K63 T64
BS02 dna F R36 R45 R20 R29
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0005515 protein binding
GO:0030527 structural constituent of chromatin
GO:0046982 protein heterodimerization activity
Biological Process
GO:0006334 nucleosome assembly
Cellular Component
GO:0000786 nucleosome
GO:0005634 nucleus
GO:0005694 chromosome

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8pep, PDBe:8pep, PDBj:8pep
PDBsum8pep
PubMed37615563
UniProtP62799|H4_XENLA Histone H4

[Back to BioLiP]