Structure of PDB 8fzh Chain F

Receptor sequence
>8fzhF (length=177) Species: 562 (Escherichia coli) [Search protein sequence]
AKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLD
NAAADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFE
RLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRG
LDITITTTAKSDEEGRALLAAFDFPFR
3D structure
PDB8fzh The ribosome termination complex remodels release factor RF3 and ejects GDP.
ChainF
Resolution2.9 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna F S73 A75 R80 S72 A74 R79
BS02 rna F N37 G39 G41 T68 A70 R71 K72 V74 F77 I79 K88 S121 D123 R125 S129 G151 L152 D153 N36 G38 G40 T67 A69 R70 K71 V73 F76 I78 K87 S120 D122 R124 S128 G150 L151 D152
BS03 rna F S24 M26 Q63 K64 L66 K69 T90 R92 S23 M25 Q62 K63 L65 K68 T89 R91
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8fzh, PDBe:8fzh, PDBj:8fzh
PDBsum8fzh
PubMed39030416
UniProtA0A140N5A3

[Back to BioLiP]