Structure of PDB 8ffi Chain F

Receptor sequence

>8ffiF (length=469) Species: 429344 (Maribacter polysiphoniae) [Search protein sequence]

MKELIYIEEPKILFAHGQKCTDARDGLALFGPLNNLYGIKSGVIGTKQGL
KIFRDYLDHIQKPIYNSNSITRPMFPGFEAVFDCKWESTGITFKEVTNED
IGKFLYNSSTHKRTYDLVSLFIDKIISANKNEDENVDVWFVIVPDEIYKY
CRPNSVLPAETYNYDAQFHDQFKARLLKHTIPTQIFRESTLAWRDFKNAF
GLPIRDFSKIEGHLAWTISTAAFYKAGGKPWKLSDVRNGVCYLGLVYKKV
EKSKNPRNACCAAQMFLDNGDGTVFKGEVGPWYNPKNGQYHLEPKEAKAL
LSQSLQSYKEQIGEYPKEVFIHAKTRFNHQEWDAFLEVTPKETNLVGVTI
SKTKPLKLYKTEGDYTILRGNAYVVNERSAFLWTVGYVPKIQTALSMEVP
NPLFIEINKGEADIKQVLKDILSLTKLNYNACIFADGEPVTLRFADKIGE
ILTASTDIKTPPLAFKYYI

3D structure

PDB

8ffi Oligomerization-mediated activation of a short prokaryotic Argonaute.

Chain

Resolution

2.7 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	F	Y148 Q205 H207 K211 I223 F224 R225 T228 F245 H251 L252 T255 G326 N468 G475 R481	Y148 Q167 H169 K173 I185 F186 R187 T190 F207 H213 L214 T217 G288 N430 G437 R443
BS02	dna	F	S67 N68 R72 K286 K287 Y328 K362 T363 R364 M435	S67 N68 R72 K248 K249 Y290 K324 T325 R326 M397
BS03	MG	F	N468 I507	N430 I469

Gene Ontology

	Molecular Function
GO:0003676	nucleic acid binding

View graph for
Molecular Function

External links

PDB	RCSB:8ffi, PDBe:8ffi, PDBj:8ffi
PDBsum	8ffi
PubMed	37494956
UniProt	A0A316E3U6

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