Structure of PDB 8c94 Chain F

Receptor sequence
>8c94F (length=177) Species: 562 (Escherichia coli) [Search protein sequence]
AKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLD
NAAADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFE
RLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRG
LDITITTTAKSDEEGRALLAAFDFPFR
3D structure
PDB8c94 Cryo-EM captures early ribosome assembly in action.
ChainF
Resolution3.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna F T34 N36 G38 V39 G40 E41 T67 R70 K71 F76 I78 I84 K87 K119 D122 R124 M129 R132 G150 T154 T34 N36 G38 V39 G40 E41 T67 R70 K71 F76 I78 I84 K87 K119 D122 R124 M129 R132 G150 T154
BS02 rna F M25 Q26 Q62 K63 L65 K68 T89 R91 K160 M25 Q26 Q62 K63 L65 K68 T89 R91 K160
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0008097 5S rRNA binding
GO:0019843 rRNA binding
Biological Process
GO:0000027 ribosomal large subunit assembly
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Cellular Component
External links
PDB RCSB:8c94, PDBe:8c94, PDBj:8c94
PDBsum8c94
PubMed36797249
UniProtP62399|RL5_ECOLI Large ribosomal subunit protein uL5 (Gene Name=rplE)

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