Structure of PDB 7qv2 Chain F

Receptor sequence

>7qv2F (length=176) Species: 224308 (Bacillus subtilis subsp. subtilis str. 168)

NRLKEKYNKEIAPALMTKFNYDSVMQVPKIEKIVINMGVGDAVQNAKAID
SAVEELTFIAGQKPVVTRAKKSIAGFRLREGMPIGAKVTLRGERMYDFLD
KLISVSLPRVRDFRGVSKKSFDGRGNYTLGIKEQLIFPEIDYDKVTKVRG
MDIVIVTTANTDEEARELLTQVGMPF

3D structure

• PDB: 7qv2 Bacterial ribosome collision sensing by a MutS DNA repair ATPase paralogue.
• Chain: F
• Resolution: 3.5 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	F	V25 M26 Q27 E32 Q63 V66 T90 R92 R95	V24 M25 Q26 E31 Q62 V65 T89 R91 R94
BS02	rna	F	V35 N37 M38 G39 G41 T68 A70 K71 F77 I85 A87 K88 K120 F122 D123 R125 T129 I132 K133 R150 G151 M152 D153	V34 N36 M37 G38 G40 T67 A69 K70 F76 I84 A86 K87 K119 F121 D122 R124 T128 I131 K132 R149 G150 M151 D152

Gene Ontology

Molecular Function

• GO:0000049 tRNA binding
• GO:0003723 RNA binding
• GO:0003735 structural constituent of ribosome
• GO:0019843 rRNA binding

Biological Process

• GO:0006412 translation

Cellular Component

• GO:0005840 ribosome
• GO:0022625 cytosolic large ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:7qv2, PDBe:7qv2, PDBj:7qv2
• PDBsum: 7qv2
• PubMed: 35264791
• UniProt: P12877|RL5_BACSU Large ribosomal subunit protein uL5 (Gene Name=rplE)