Structure of PDB 7lba Chain F

Receptor sequence
>7lbaF (length=302) Species: 562 (Escherichia coli) [Search protein sequence]
STLGHQYDNSLVSNAFGFLRLPMNFQPYDSDADWVITGVPFDMATSGRAG
GRHGPAAIRQVSTNLAWEHNRFPWNFDMRERLNVVDCGDLVYAFGDAREM
SEKLQAHAEKLLAAGKRMLSFGGDHFVTLPLLRAHAKHFGKMALVHFDAH
TDTYANGCEFDHGTMFYTAPKEGLIDPNHSVQIGIRTEFDKDNGFTVLDA
CQVNDRSVDDVIAQVKQIVGDMPVYLTFDIDCLDPAFAPGTGTPVIGGLT
SDRAIKLVRGLKDLNIVGMDVVEVAPAYDQSEITALAAATLALEMLYIQA
AK
3D structure
PDB7lba Structure of the E. coli agmatinase, SPEB.
ChainF
Resolution2.2 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 3.5.3.11: agmatinase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MN F D149 H151 D230 D232 D148 H150 D229 D231
BS02 MN F H126 D149 D153 D230 H125 D148 D152 D229
Gene Ontology
Molecular Function
GO:0008783 agmatinase activity
GO:0016787 hydrolase activity
GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines
GO:0030145 manganese ion binding
GO:0042802 identical protein binding
GO:0046872 metal ion binding
Biological Process
GO:0008295 spermidine biosynthetic process
GO:0009446 putrescine biosynthetic process
GO:0033388 putrescine biosynthetic process from arginine
GO:0033389 putrescine biosynthetic process from arginine, using agmatinase
Cellular Component
GO:0005829 cytosol

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7lba, PDBe:7lba, PDBj:7lba
PDBsum7lba
PubMed33857156
UniProtP60651|SPEB_ECOLI Agmatinase (Gene Name=speB)

[Back to BioLiP]