Structure of PDB 6yei Chain F

Receptor sequence
>6yeiF (length=410) Species: 3702 (Arabidopsis thaliana) [Search protein sequence]
MNALAATNRNFKLAARLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLAS
FVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAKIPYGG
AKGGIGCDPSKLSISELERLTRVFTQKIHDLIGIHTDVPAPDMGTGPQTM
AWILDEYSKFHGYSPAVVTGKPIDLGGSLGRDAATGRGVMFGTEALLNEH
GKTISGQRFVIQGFGNVGSWAAKLISEKGGKIVAVSDITGAIKNKDGIDI
PALLKHTKEHRGVKGFDGADPIDPNSILVEDCDILVPAALGGVINRENAN
EIKAKFIIEAANHPTDPDADEILSKKGVVILPDIYANSGGVTVSYFEWVQ
NIQGFMWEEEKVNDELKTYMTRSFKDLKEMCKTHSCDLRMGAFTLGVNRV
AQATILRGWG
3D structure
PDB6yei Structural Studies of Glutamate Dehydrogenase (Isoform 1) FromArabidopsis thaliana, an Important Enzyme at the Branch-Point Between Carbon and Nitrogen Metabolism.
ChainF
Resolution2.02 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 1.4.1.3: glutamate dehydrogenase [NAD(P)(+)].
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 K F S27 L28 I30 P31 F32 S27 L28 I30 P31 F32
BS02 NAD F R70 D142 M143 T185 F214 G215 N216 V217 D237 I238 A288 A289 A311 N312 N337 R70 D142 M143 T185 F214 G215 N216 V217 D237 I238 A288 A289 A311 N312 N337 MOAD: Kd=72uM
BS03 AKG F K66 G68 M87 K90 K102 A140 V341 S344 K66 G68 M87 K90 K102 A140 V341 S344
Gene Ontology
Molecular Function
GO:0004352 glutamate dehydrogenase (NAD+) activity
GO:0004353 glutamate dehydrogenase [NAD(P)+] activity
GO:0004354 glutamate dehydrogenase (NADP+) activity
GO:0005507 copper ion binding
GO:0005524 ATP binding
GO:0008270 zinc ion binding
GO:0016491 oxidoreductase activity
GO:0016639 oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor
GO:0050897 cobalt ion binding
Biological Process
GO:0006520 amino acid metabolic process
GO:0009646 response to absence of light
Cellular Component
GO:0005739 mitochondrion
GO:0009536 plastid

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6yei, PDBe:6yei, PDBj:6yei
PDBsum6yei
PubMed32655590
UniProtQ43314|DHE1_ARATH Glutamate dehydrogenase 1 (Gene Name=GDH1)

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