Structure of PDB 6wd2 Chain F

Receptor sequence

>6wd2F (length=38) Species: 562 (Escherichia coli)

MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG

3D structure

• PDB: 6wd2 Cryo-EM of elongating ribosome with EF-Tu•GTP elucidates tRNA proofreading.
• Chain: F
• Resolution: 3.6 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	F	M1 K2 R4 A5 S6 K8 L10 R12 K15 R19 D20 R24 P31 K32 K34 R36 G38	M1 K2 R4 A5 S6 K8 L10 R12 K15 R19 D20 R24 P31 K32 K34 R36 G38

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome

Biological Process

• GO:0002181 cytoplasmic translation
• GO:0006412 translation

Cellular Component

• GO:0005737 cytoplasm
• GO:0005840 ribosome
• GO:0022625 cytosolic large ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:6wd2, PDBe:6wd2, PDBj:6wd2
• PDBsum: 6wd2
• PubMed: 32612237
• UniProt: P0A7Q6|RL36_ECOLI Large ribosomal subunit protein bL36A (Gene Name=rpmJ)