Structure of PDB 6dzp Chain F

Receptor sequence
>6dzpF (length=182) Species: 246196 (Mycolicibacterium smegmatis MC2 155) [Search protein sequence]
KALPRLKQRYREEIREALQQEFNYANVMQIPGVVKVVVNMGVGDAARDAK
LINGAINDLALITGQKPEVRRARKSIAQFKLREGMPIGARVTLRGDRMWE
FLDRLISIALPRIRDFRGLSPKQFDGTGNYTFGLNEQSMFHEIDVDSIDR
PRGMDITVVTTATNDAEGRALLRALGFPFKEN
3D structure
PDB6dzp Zinc depletion induces ribosome hibernation in mycobacteria.
ChainF
Resolution3.42 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna F K40 N44 G46 G48 R75 R78 F84 I92 R95 K127 Q128 F129 T136 N140 G158 D160 K35 N39 G41 G43 R70 R73 F79 I87 R90 K122 Q123 F124 T131 N135 G153 D155
BS02 rna F N31 M33 Q34 Q70 K71 E73 T97 R99 N26 M28 Q29 Q65 K66 E68 T92 R94
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6dzp, PDBe:6dzp, PDBj:6dzp
PDBsum6dzp
PubMed30038002
UniProtA0QSG1|RL5_MYCS2 Large ribosomal subunit protein uL5 (Gene Name=rplE)

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