Structure of PDB 6bk8 Chain F

Receptor sequence
>6bk8F (length=199) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence]
DEINEPPPNICEQCLGDEANIRMTKIPQGSECKICTLPFTLYHFKTSKRS
NNIIKTLICVRCATQRNICQCCMLDSRWHIPIQLRDHLISLVNEENVMTE
EAKNDMMKRFLSLKNVKLGGAQITSDPSEADNIVDKLKNILLRATKSFFL
YNIDASIPEWKITDTVSQLLLSLIVNHKAKCGGLRFQSSELGERFVSKI
3D structure
PDB6bk8 Structure of the yeast spliceosomal postcatalytic P complex.
ChainF
Resolution3.3 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna F I28 K47 R51 N53 K57 I26 K45 R49 N51 K55
BS02 ZN F C13 C16 C71 C74 C11 C14 C69 C72
BS03 ZN F C34 C37 C61 C64 C32 C35 C59 C62
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0017070 U6 snRNA binding
GO:0036002 pre-mRNA binding
Biological Process
GO:0000398 mRNA splicing, via spliceosome
GO:0006397 mRNA processing
GO:0008380 RNA splicing
Cellular Component
GO:0000974 Prp19 complex
GO:0005634 nucleus
GO:0005681 spliceosomal complex
GO:0071006 U2-type catalytic step 1 spliceosome
GO:0071007 U2-type catalytic step 2 spliceosome

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6bk8, PDBe:6bk8, PDBj:6bk8
PDBsum6bk8
PubMed29146870
UniProtP38241|SLT11_YEAST Pre-mRNA-splicing factor SLT11 (Gene Name=ECM2)

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