Structure of PDB 6b1t Chain F

Receptor sequence
>6b1tF (length=910) Species: 28285 (Human adenovirus 5) [Search protein sequence]
MMPQWSYMHISGQDASEYLSPGLVQFARATETYFSLNNKFRNPTVAPTHD
VTTDRSQRLTLRFIPVDREDTAYSYKARFTLAVGDNRVLDMASTYFDIRG
VLDRGPTFKPYSGTAYNALAPKGAPNPCEWDEAQKTHVFGQAPYSGINIT
KEGIQIGVEGQTPKYADKTFQPEPQIGESQWYETEINHAAGRVLKKTTPM
KPCYGSYAKPTNENGGQGILVKQLESQVEMQFFSTTEATNLTPKVVLYSE
DVDIETPDTHISYMPTIKEGNSRELMGQQSMPNRPNYIAFRDNFIGLMYY
NSTGNMGVLAGQASQLNAVVDLQDRNTELSYQLLLDSIGDRTRYFSMWNQ
AVDSYDPDVRIIENHGTEDELPNYCFPLGGVINTETLTKVKPKTNGWEKD
ATEFSDKNEIRVGNNFAMEINLNANLWRNFLYSNIALYLPDKLKYSPSNV
KISDNPNTYDYMNKRVVAPGLVDCYINLGARWSLDYMDNVNPFNHHRNAG
LRYRSMLLGNGRYVPFHIQVPQKFFAIKNLLLLPGSYTYEWNFRKDVNMV
LQSSLGNDLRVDGASIKFDSICLYATFFPMAHNTASTLEAMLRNDTNDQS
FNDYLSAANMLYPIPANATNVPISIPSRNWAAFRGWAFTRLKTKETPSLG
SGYDPYYTYSGSIPYLDGTFYLNHTFKKVAITFDSSVSWPGNDRLLTPNE
FEIKRSVDGEGYNVAQCNMTKDWFLVQMLANYNIGYQGFYIPESYKDRMY
SFFRNFQPMSRQVVDDTKYKDYQQVGILHQHNNSGFVGYLAPTMREGQAY
PANFPYPLIGKTAVDSITQKKFLCDRTLWRIPFSSNFMSMGALTDLGQNL
LYANSAHALDMTFEVDPMDEPTLLYVLFEVFDVVRVHRPHRGVIETVYLR
TPFSAGNATT
3D structure
PDB6b1t Atomic Structures of Minor Proteins VI and VII in Human Adenovirus.
ChainF
Resolution3.2 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide F A20 S21 Q30 F31 R33 A34 E36 Y38 N42 F45 R46 N47 A15 S16 Q25 F26 R28 A29 E31 Y33 N37 F40 R41 N42
BS02 peptide F G17 D19 E22 P48 T49 V50 P52 D55 N644 Y646 L647 R676 R872 A884 F923 G12 D14 E17 P43 T44 V45 P47 D50 N602 Y604 L605 R634 R830 A842 F881
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
Biological Process
GO:0046718 symbiont entry into host cell
GO:0075521 microtubule-dependent intracellular transport of viral material towards nucleus
Cellular Component
GO:0019028 viral capsid
GO:0039623 T=25 icosahedral viral capsid
GO:0042025 host cell nucleus
GO:0043657 host cell

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6b1t, PDBe:6b1t, PDBj:6b1t
PDBsum6b1t
PubMed28978703
UniProtP04133|CAPSH_ADE05 Hexon protein (Gene Name=L3)

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