Structure of PDB 5v3j Chain F

Receptor sequence

>5v3jF (length=278) Species: 10090 (Mus musculus) [Search protein sequence]

PHKCKECGKAFHTPSQLSHHQKLHVGEKPYKCQECGKAFPSNAQLSLHHR
VHTDEKCFECKECGKAFMRPSHLLRHQRIHTGEKPHKCKECGKAFRYDTQ
LSLHLLTHAGARRFECKDCDKVYSCASQLALHQMSHTGEKPHKCKECGKG
FISDSHLLRHQSVHTGETPYKCKECGKGFRRGSELARHQRAHSGDKPYKC
KECGKSFTCTTELFRHQKVHTGDRPHKCKECGKAFIRRSELTHHERSHSG
EKPYECKECGKTFGRGSELSRHQKIHTG

3D structure

PDB

5v3j DNA Conformation Induces Adaptable Binding by Tandem Zinc Finger Proteins.

Chain

Resolution

2.064 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	dna	F	L408 R411 F428 R430 H433 R436 H437 I440 R457 Y458 Q461 K482 K510 H517 R520 H521 S523 V524 K538 F540 R541 R542 E545 R548 F568 E573 R576 H577 R598 E601 R626 E629 R632	L47 R50 F67 R69 H72 R75 H76 I79 R96 Y97 Q100 K121 K149 H156 R159 H160 S162 V163 K177 F179 R180 R181 E184 R187 F207 E212 R215 H216 R237 E240 R265 E268 R271
BS02	dna	F	S402 Q405 T460 C486 S488 S514 S516 H517 T572 F575 K579 S628 S631 R632	S41 Q44 T99 C125 S127 S153 S155 H156 T211 F214 K218 S267 S270 R271
BS03	ZN	F	C365 C368 H381 H385	C4 C7 H20 H24
BS04	ZN	F	C393 C396 H409 H413	C32 C35 H48 H52
BS05	ZN	F	C421 C424 H437 H441	C60 C63 H76 H80
BS06	ZN	F	C449 C452 H465 H469	C88 C91 H104 H108
BS07	ZN	F	C477 C480 H493 H497	C116 C119 H132 H136
BS08	ZN	F	C505 C508 H521 H525	C144 C147 H160 H164
BS09	ZN	F	C533 C536 H549 H553	C172 C175 H188 H192
BS10	ZN	F	C561 C564 H577 H581	C200 C203 H216 H220
BS11	ZN	F	C589 C592 H605 H609	C228 C231 H244 H248
BS12	ZN	F	C617 C620 H633 H637	C256 C259 H272 H276
BS13	MG	F	C477 C480	C116 C119

External links

PDB	RCSB:5v3j, PDBe:5v3j, PDBj:5v3j
PDBsum	5v3j
PubMed	29551271
UniProt	E9PYI1\|ZN568_MOUSE Zinc finger protein 568 (Gene Name=Znf568)

[Back to BioLiP]