Structure of PDB 5lzd Chain F

Receptor sequence

>5lzdF (length=177) Species: 562 (Escherichia coli) [Search protein sequence]

AKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLD
NAAADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFE
RLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRG
LDITITTTAKSDEEGRALLAAFDFPFR

3D structure

PDB

5lzd The pathway to GTPase activation of elongation factor SelB on the ribosome.

Chain

Resolution

3.4 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	F	S72 A74	S72 A74
BS02	rna	F	K32 N36 V39 G40 A69 R70 K71 F76 I78 I84 K87 S120 D122 N126 S128 M129 G130 V131 R132 G150 L151 D152	K32 N36 V39 G40 A69 R70 K71 F76 I78 I84 K87 S120 D122 N126 S128 M129 G130 V131 R132 G150 L151 D152
BS03	rna	F	Y21 S23 M25 Q26 Q62 K63 L65 T89 R91	Y21 S23 M25 Q26 Q62 K63 L65 T89 R91

Gene Ontology

	Molecular Function
GO:0000049	tRNA binding
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0008097	5S rRNA binding
GO:0019843	rRNA binding

	Biological Process
GO:0000027	ribosomal large subunit assembly
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:5lzd, PDBe:5lzd, PDBj:5lzd
PDBsum	5lzd
PubMed	27842381
UniProt	P62399\|RL5_ECOLI Large ribosomal subunit protein uL5 (Gene Name=rplE)

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