Structure of PDB 5lqx Chain F

Receptor sequence
>5lqxF (length=470) Species: 870730 (Ogataea angusta) [Search protein sequence]
GPASGKIRAVIGAVVDVQFEQGELPAILNALTIDQGNNQKLVLEVAQHLG
ENAVRAIAMDGTEGLVRGQTVVDTGAPISVPVGRGTLGRIINVVGEPIDE
RGPIECKQRNPIHADPPSFVEQSTEAEVLETGIKVVDLLAPYARGGKIGL
FGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETG
VINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFV
DNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTRKGSVT
SVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKS
RLLDVSVVGQEHYDVATGVQQTLQAYKSLQDIIAILGMDELSEQDKLTVE
RARKIQRFLSQPFAVAEVFTGIEGKLVRLKDTIASFKAVLEGKYDHLPEN
AFYMVGGIEDVVAKAEKIAA
3D structure
PDB5lqx Structure of the mitochondrial ATP synthase fromPichia angustadetermined by electron cryo-microscopy.
ChainF
Resolution7.9 Å
3D
structure
Catalytic site residues are labeled in the structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Catalytic site (original residue number in PDB) G161 G187 V188 S354
Catalytic site (residue number reindexed from 1) G155 G181 V182 S348
Enzyme Commision number 7.1.2.2: H(+)-transporting two-sector ATPase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ADP F A160 G161 G163 V166 Y346 A154 G155 G157 V160 Y340
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0016887 ATP hydrolysis activity
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
GO:0046961 proton-transporting ATPase activity, rotational mechanism
Biological Process
GO:0006754 ATP biosynthetic process
GO:0015986 proton motive force-driven ATP synthesis
GO:0042776 proton motive force-driven mitochondrial ATP synthesis
GO:0046034 ATP metabolic process
GO:1902600 proton transmembrane transport
Cellular Component
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0016020 membrane
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5lqx, PDBe:5lqx, PDBj:5lqx
PDBsum5lqx
PubMed27791192
UniProtC0HK52|ATPB_PICAN ATP synthase subunit beta, mitochondrial (Gene Name=ATP2)

[Back to BioLiP]